IL_5LZE_101

3D structure

PDB id

5LZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

5LZE|1|A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZE_101 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0957

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

5LZE|1|A|C|2636
5LZE|1|A|U|2637
5LZE|1|A|G|2638
5LZE|1|A|A|2639
5LZE|1|A|G|2640
*
5LZE|1|A|C|2774
5LZE|1|A|G|2775
5LZE|1|A|A|2776
5LZE|1|A|G|2777
5LZE|1|A|A|2778
5LZE|1|A|U|2779
5LZE|1|A|G|2780
5LZE|1|A|A|2781
5LZE|1|A|G|2782

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13