IL_5LZE_171

3D structure

PDB id

5LZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZE_171 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1064

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5LZE|1|a|C|1303
5LZE|1|a|G|1304
5LZE|1|a|G|1305
5LZE|1|a|A|1306
5LZE|1|a|U|1307
5LZE|1|a|U|1308
*
5LZE|1|a|A|1329
5LZE|1|a|U|1330
5LZE|1|a|G|1331
5LZE|1|a|A|1332
5LZE|1|a|A|1333
5LZE|1|a|G|1334

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S13