IL_5LZF_105

3D structure

PDB id

5LZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

5LZF|1|A|U|2689, 5LZF|1|A|U|2690

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZF_105 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.1017

The information below is about IL_5J7L_348

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

5LZF|1|A|U|2687
5LZF|1|A|G|2688
5LZF|1|A|U|2689
5LZF|1|A|U|2690
5LZF|1|A|C|2691
*
5LZF|1|A|G|2718
5LZF|1|A|G|2719
5LZF|1|A|U|2720
5LZF|1|A|A|2721
5LZF|1|A|G|2722

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19