IL_5LZY_200
3D structure
- PDB id
- 5LZY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.99 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 5LZY|1|9|A|628, 5LZY|1|9|U|630
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LZY_200 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.4193
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5LZY|1|9|G|611
5LZY|1|9|U|612
5LZY|1|9|G|613
5LZY|1|9|C|614
5LZY|1|9|C|615
5LZY|1|9|A|616
5LZY|1|9|G|617
*
5LZY|1|9|C|624
5LZY|1|9|G|625
5LZY|1|9|G|626
5LZY|1|9|U|627
5LZY|1|9|A|628
5LZY|1|9|A|629
5LZY|1|9|U|630
5LZY|1|9|U|631
5LZY|1|9|C|632
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain DD
- uS3
- Chain XX
- uS12
- Chain ee
- eS30
- Chain ii
- Protein pelota homolog
Coloring options: