IL_5M1J_006
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUUAGUAA*UGAAGCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5M1J_006 not in the Motif Atlas
- Homologous match to IL_5TBW_006
- Geometric discrepancy: 0.1154
- The information below is about IL_5TBW_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
5M1J|1|14|C|82
5M1J|1|14|U|83
5M1J|1|14|U|84
5M1J|1|14|A|85
5M1J|1|14|G|86
5M1J|1|14|U|87
5M1J|1|14|A|88
5M1J|1|14|A|89
*
5M1J|1|14|U|97
5M1J|1|14|G|98
5M1J|1|14|A|99
5M1J|1|14|A|100
5M1J|1|14|G|101
5M1J|1|14|C|102
5M1J|1|14|G|103
Current chains
- Chain 14
- 25S ribosomal RNA
Nearby chains
- Chain C5
- 60S ribosomal protein L4-A
- Chain L5
- 60S ribosomal protein L13-A
- Chain N5
- 60S ribosomal protein L15-A
- Chain Q5
- 60S ribosomal protein L18-A
- Chain a5
- 60S ribosomal protein L28
- Chain o5
- 60S ribosomal protein L42-B
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