IL_5M1J_020

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

5M1J|1|14|U|534, 5M1J|1|14|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_020 not in the Motif Atlas

Homologous match to IL_5TBW_020

Geometric discrepancy: 0.1177

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5M1J|1|14|G|531
5M1J|1|14|A|532
5M1J|1|14|A|533
5M1J|1|14|U|534
5M1J|1|14|G|535
5M1J|1|14|U|536
5M1J|1|14|A|537
5M1J|1|14|G|538
*
5M1J|1|14|U|553
5M1J|1|14|A|554
5M1J|1|14|U|555
5M1J|1|14|U|556
5M1J|1|14|A|557
5M1J|1|14|U|558
5M1J|1|14|A|559
5M1J|1|14|G|560
5M1J|1|14|C|561

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain M5

60S ribosomal protein L14-A

Chain S5

60S ribosomal protein L20-A