IL_5M1J_053

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

5M1J|1|14|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_053 not in the Motif Atlas

Homologous match to IL_5TBW_054

Geometric discrepancy: 0.1832

The information below is about IL_5TBW_054

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

5M1J|1|14|U|1218
5M1J|1|14|C|1219
5M1J|1|14|U|1220
5M1J|1|14|A|1221
5M1J|1|14|G|1222
5M1J|1|14|A|1223
5M1J|1|14|C|1224
5M1J|1|14|A|1225
5M1J|1|14|G|1226
*
5M1J|1|14|C|1283
5M1J|1|14|C|1284
5M1J|1|14|G|1285
5M1J|1|14|A|1286
5M1J|1|14|A|1287

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain S5

60S ribosomal protein L20-A

Chain m5

Ubiquitin-60S ribosomal protein L40