IL_5M1J_067

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_067 not in the Motif Atlas

Homologous match to IL_5TBW_067

Geometric discrepancy: 0.1354

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

5M1J|1|14|U|1645
5M1J|1|14|G|1646
5M1J|1|14|A|1647
5M1J|1|14|A|1648
5M1J|1|14|U|1649
*
5M1J|1|14|A|1806
5M1J|1|14|G|1807
5M1J|1|14|G|1808
5M1J|1|14|A|1809
5M1J|1|14|A|1810

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain A5

60S ribosomal protein L2-A

Chain Z5

60S ribosomal protein L27-A

Chain g5

60S ribosomal protein L34-A