IL_5M1J_073
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGGAAUU*GGAGAUG
- Length
- 14 nucleotides
- Bulged bases
- 5M1J|1|14|U|1716, 5M1J|1|14|A|1729
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5M1J_073 not in the Motif Atlas
- Homologous match to IL_5TBW_073
- Geometric discrepancy: 0.1212
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
5M1J|1|14|C|1711
5M1J|1|14|G|1712
5M1J|1|14|G|1713
5M1J|1|14|A|1714
5M1J|1|14|A|1715
5M1J|1|14|U|1716
5M1J|1|14|U|1717
*
5M1J|1|14|G|1727
5M1J|1|14|G|1728
5M1J|1|14|A|1729
5M1J|1|14|G|1730
5M1J|1|14|A|1731
5M1J|1|14|U|1732
5M1J|1|14|G|1733
Current chains
- Chain 14
- 25S ribosomal RNA
Nearby chains
- Chain L2
- 40S ribosomal protein S11-A
- Chain N2
- 40S ribosomal protein S13
- Chain R5
- 60S ribosomal protein L19-A
- Chain Z5
- 60S ribosomal protein L27-A
- Chain c5
- 60S ribosomal protein L30
- Chain p5
- 60S ribosomal protein L43-B
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