IL_5M1J_100

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAG*CGCCAGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_100 not in the Motif Atlas

Geometric match to IL_1MZP_003

Geometric discrepancy: 0.2135

The information below is about IL_1MZP_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

5M1J|1|14|G|2466
5M1J|1|14|G|2467
5M1J|1|14|A|2468
5M1J|1|14|G|2469
*
5M1J|1|14|C|2476
5M1J|1|14|G|2477
5M1J|1|14|C|2478
5M1J|1|14|C|2479
5M1J|1|14|A|2480
5M1J|1|14|G|2481
5M1J|1|14|U|2482
5M1J|1|14|G|2483
5M1J|1|14|A|2484
5M1J|1|14|A|2485
5M1J|1|14|A|2486
5M1J|1|14|U|2487
5M1J|1|14|A|2488
5M1J|1|14|C|2489

Current chains

Chain 14

25S ribosomal RNA

Nearby chains