IL_5M1J_120
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUUAGUAC*GGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5M1J_120 not in the Motif Atlas
- Homologous match to IL_5TBW_116
- Geometric discrepancy: 0.097
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5M1J|1|14|C|3018
5M1J|1|14|U|3019
5M1J|1|14|U|3020
5M1J|1|14|A|3021
5M1J|1|14|G|3022
5M1J|1|14|U|3023
5M1J|1|14|A|3024
5M1J|1|14|C|3025
*
5M1J|1|14|G|3030
5M1J|1|14|G|3031
5M1J|1|14|A|3032
5M1J|1|14|A|3033
5M1J|1|14|C|3034
5M1J|1|14|A|3035
5M1J|1|14|G|3036
Current chains
- Chain 14
- 25S ribosomal RNA
Nearby chains
- Chain A1
- Protein DOM34
- Chain A6
- Protein HBS1
- Chain B5
- 60S ribosomal protein L3
- Chain H5
- 60S ribosomal protein L9-A
- Chain V5
- 60S ribosomal protein L23-A
- Chain m5
- Ubiquitin-60S ribosomal protein L40
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