IL_5M1J_121

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAAUU*ACCA

Length

9 nucleotides

Bulged bases

5M1J|1|14|C|3092

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_121 not in the Motif Atlas

Homologous match to IL_5TBW_117

Geometric discrepancy: 0.1155

The information below is about IL_5TBW_117

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_14592.1

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

5M1J|1|14|U|3047
5M1J|1|14|A|3048
5M1J|1|14|A|3049
5M1J|1|14|U|3050
5M1J|1|14|U|3051
*
5M1J|1|14|A|3091
5M1J|1|14|C|3092
5M1J|1|14|C|3093
5M1J|1|14|A|3094

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain B5

60S ribosomal protein L3

Chain V5

60S ribosomal protein L23-A

Chain W5

60S ribosomal protein L24-A