3D structure

PDB id
5M1J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nonstop ribosomal complex bound with Dom34 and Hbs1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GGUC*GGAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5M1J_179 not in the Motif Atlas
Homologous match to IL_4V88_430
Geometric discrepancy: 0.0989
The information below is about IL_4V88_430
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_67085.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
55

Unit IDs

5M1J|1|22|G|871
5M1J|1|22|G|872
5M1J|1|22|U|873
5M1J|1|22|C|874
*
5M1J|1|22|G|953
5M1J|1|22|G|954
5M1J|1|22|A|955
5M1J|1|22|C|956

Current chains

Chain 22
18S ribosomal RNA

Nearby chains

Chain B2
40S ribosomal protein S1-A
Chain N2
40S ribosomal protein S13
Chain b2
40S ribosomal protein S27-A

Coloring options:


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