IL_5M1J_179

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUC*GGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_179 not in the Motif Atlas

Homologous match to IL_4V88_430

Geometric discrepancy: 0.0989

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5M1J|1|22|G|871
5M1J|1|22|G|872
5M1J|1|22|U|873
5M1J|1|22|C|874
*
5M1J|1|22|G|953
5M1J|1|22|G|954
5M1J|1|22|A|955
5M1J|1|22|C|956

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain B2

40S ribosomal protein S1-A

Chain N2

40S ribosomal protein S13

Chain b2

40S ribosomal protein S27-A