IL_5M1J_180
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGGGG*CAAG
- Length
- 9 nucleotides
- Bulged bases
- 5M1J|1|22|G|876
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5M1J_180 not in the Motif Atlas
- Geometric match to IL_4V88_431
- Geometric discrepancy: 0.1466
- The information below is about IL_4V88_431
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
5M1J|1|22|C|874
5M1J|1|22|G|875
5M1J|1|22|G|876
5M1J|1|22|G|877
5M1J|1|22|G|878
*
5M1J|1|22|C|950
5M1J|1|22|A|951
5M1J|1|22|A|952
5M1J|1|22|G|953
Current chains
- Chain 22
- 18S ribosomal RNA
Nearby chains
- Chain B2
- 40S ribosomal protein S1-A
- Chain N2
- 40S ribosomal protein S13
- Chain a2
- 40S ribosomal protein S26-B
- Chain c5
- 60S ribosomal protein L30
Coloring options: