IL_5M1J_181
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUAU*AGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5M1J_181 not in the Motif Atlas
- Homologous match to IL_4V88_432
- Geometric discrepancy: 0.1187
- The information below is about IL_4V88_432
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
5M1J|1|22|G|885
5M1J|1|22|U|886
5M1J|1|22|A|887
5M1J|1|22|U|888
*
5M1J|1|22|A|924
5M1J|1|22|G|925
5M1J|1|22|A|926
5M1J|1|22|C|927
Current chains
- Chain 22
- 18S ribosomal RNA
Nearby chains
- Chain A5
- 60S ribosomal protein L2-A
- Chain B2
- 40S ribosomal protein S1-A
- Chain O2
- 40S ribosomal protein S14-A
- Chain a2
- 40S ribosomal protein S26-B
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