IL_5M1J_191
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 5M1J|1|22|C|1158, 5M1J|1|22|C|1159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5M1J_191 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.1053
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
5M1J|1|22|A|1157
5M1J|1|22|C|1158
5M1J|1|22|C|1159
5M1J|1|22|A|1160
*
5M1J|1|22|U|1617
5M1J|1|22|C|1618
5M1J|1|22|C|1619
5M1J|1|22|C|1620
5M1J|1|22|U|1621
Current chains
- Chain 22
- 18S ribosomal RNA
Nearby chains
- Chain A3
- Transfer RNA; tRNA
- Chain F2
- 40S ribosomal protein S5
- Chain Q2
- 40S ribosomal protein S16-A
- Chain X7
- nonstop mRNA
- Chain a2
- 40S ribosomal protein S26-B
- Chain c2
- 40S ribosomal protein S28-B
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