IL_5M1J_200
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 5M1J|1|22|U|1432, 5M1J|1|22|G|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5M1J_200 not in the Motif Atlas
- Homologous match to IL_4V88_451
- Geometric discrepancy: 0.1289
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
5M1J|1|22|U|1276
5M1J|1|22|G|1277
5M1J|1|22|G|1278
*
5M1J|1|22|U|1430
5M1J|1|22|C|1431
5M1J|1|22|U|1432
5M1J|1|22|G|1433
5M1J|1|22|U|1434
5M1J|1|22|G|1435
5M1J|1|22|A|1436
Current chains
- Chain 22
- 18S ribosomal RNA
Nearby chains
- Chain A1
- Protein DOM34
- Chain D2
- 40S ribosomal protein S3
- Chain K2
- 40S ribosomal protein S10-A
- Chain U2
- 40S ribosomal protein S20
- Chain d2
- 40S ribosomal protein S29-A
Coloring options: