IL_5M1J_229
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UAAU*AUCGA
- Length
- 9 nucleotides
- Bulged bases
- 5M1J|1|44|G|95
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5M1J_229 not in the Motif Atlas
- Geometric match to IL_1GID_008
- Geometric discrepancy: 0.3738
- The information below is about IL_1GID_008
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 36
Unit IDs
5M1J|1|44|U|64
5M1J|1|44|A|65
5M1J|1|44|A|66
5M1J|1|44|U|67
*
5M1J|1|44|A|92
5M1J|1|44|U|93
5M1J|1|44|C|94
5M1J|1|44|G|95
5M1J|1|44|A|96
Current chains
- Chain 44
- 5.8S ribosomal RNA
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain Y5
- 60S ribosomal protein L26-A
- Chain h5
- 60S ribosomal protein L35-A
- Chain j5
- 60S ribosomal protein L37-A
Coloring options: