IL_5M1J_242
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAUGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 5M1J|1|14|U|2159, 5M1J|1|14|U|2175, 5M1J|1|14|C|2179
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5M1J_242 not in the Motif Atlas
- Homologous match to IL_8C3A_088
- Geometric discrepancy: 0.1689
- The information below is about IL_8C3A_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5M1J|1|14|C|2156
5M1J|1|14|G|2157
5M1J|1|14|A|2158
5M1J|1|14|U|2159
5M1J|1|14|G|2160
5M1J|1|14|G|2161
*
5M1J|1|14|U|2173
5M1J|1|14|G|2174
5M1J|1|14|U|2175
5M1J|1|14|U|2176
5M1J|1|14|G|2177
5M1J|1|14|A|2178
5M1J|1|14|C|2179
5M1J|1|14|G|2180
Current chains
- Chain 14
- 25S ribosomal RNA
Nearby chains
- Chain 22
- Small subunit ribosomal RNA; SSU rRNA
- Chain A5
- 60S ribosomal protein L2-A
- Chain p5
- 60S ribosomal protein L43-B
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