IL_5MC6_064
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 5MC6|1|2|U|1432, 5MC6|1|2|G|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MC6_064 not in the Motif Atlas
- Homologous match to IL_4V88_451
- Geometric discrepancy: 0.1525
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
5MC6|1|2|U|1276
5MC6|1|2|G|1277
5MC6|1|2|G|1278
*
5MC6|1|2|U|1430
5MC6|1|2|C|1431
5MC6|1|2|U|1432
5MC6|1|2|G|1433
5MC6|1|2|U|1434
5MC6|1|2|G|1435
5MC6|1|2|A|1436
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain A
- 40S ribosomal protein S3
- Chain C
- 40S ribosomal protein S10-A
- Chain J
- 40S ribosomal protein S20
- Chain M
- 40S ribosomal protein S29-A
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