IL_5MC6_111
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 5MC6|1|BQ|A|933, 5MC6|1|BQ|G|937
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MC6_111 not in the Motif Atlas
- Geometric match to IL_5TBW_028
- Geometric discrepancy: 0.097
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
5MC6|1|BQ|G|805
5MC6|1|BQ|A|806
5MC6|1|BQ|A|807
5MC6|1|BQ|A|808
5MC6|1|BQ|G|809
*
5MC6|1|BQ|C|931
5MC6|1|BQ|U|932
5MC6|1|BQ|A|933
5MC6|1|BQ|G|934
5MC6|1|BQ|U|935
5MC6|1|BQ|A|936
5MC6|1|BQ|G|937
5MC6|1|BQ|C|938
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AF
- 60S ribosomal protein L37-A
- Chain AJ
- 60S ribosomal protein L13-A
- Chain AQ
- 60S ribosomal protein L15-A
- Chain AR
- 60S ribosomal protein L28
- Chain BE
- 60S ribosomal protein L4-A
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