IL_5MC6_126
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUUCCG*UGAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MC6_126 not in the Motif Atlas
- Homologous match to IL_5TBW_043
- Geometric discrepancy: 0.3031
- The information below is about IL_5TBW_043
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_71110.1
- Basepair signature
- cWW-cWW-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
5MC6|1|BQ|G|1013
5MC6|1|BQ|U|1014
5MC6|1|BQ|U|1015
5MC6|1|BQ|C|1016
5MC6|1|BQ|C|1017
5MC6|1|BQ|G|1018
*
5MC6|1|BQ|U|1034
5MC6|1|BQ|G|1035
5MC6|1|BQ|A|1036
5MC6|1|BQ|C|1037
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AG
- 60S ribosomal protein L11-A
- Chain BD
- 60S ribosomal protein L10
- Chain BI
- 60S ribosomal protein L5
- Chain m
- Transfer RNA; tRNA
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