IL_5MC6_136

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

5MC6|1|BQ|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_136 not in the Motif Atlas

Homologous match to IL_5TBW_054

Geometric discrepancy: 0.1965

The information below is about IL_5TBW_054

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

5MC6|1|BQ|U|1218
5MC6|1|BQ|C|1219
5MC6|1|BQ|U|1220
5MC6|1|BQ|A|1221
5MC6|1|BQ|G|1222
5MC6|1|BQ|A|1223
5MC6|1|BQ|C|1224
5MC6|1|BQ|A|1225
5MC6|1|BQ|G|1226
*
5MC6|1|BQ|C|1283
5MC6|1|BQ|C|1284
5MC6|1|BQ|G|1285
5MC6|1|BQ|A|1286
5MC6|1|BQ|A|1287

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AO

Ubiquitin-60S ribosomal protein L40

Chain BH

60S ribosomal protein L20-A