IL_5MC6_141

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_141 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.0994

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

5MC6|1|BQ|G|1444
5MC6|1|BQ|U|1445
5MC6|1|BQ|A|1446
5MC6|1|BQ|G|1447
5MC6|1|BQ|U|1448
5MC6|1|BQ|A|1449
5MC6|1|BQ|G|1450
*
5MC6|1|BQ|C|2354
5MC6|1|BQ|G|2355
5MC6|1|BQ|A|2356
5MC6|1|BQ|A|2357
5MC6|1|BQ|A|2358
5MC6|1|BQ|C|2359

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AX

60S ribosomal protein L17-A

Chain BE

60S ribosomal protein L4-A

Chain BS

5.8S ribosomal RNA; 5.8S rRNA