IL_5MC6_149

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_149 not in the Motif Atlas

Geometric match to IL_5TBW_067

Geometric discrepancy: 0.1786

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

5MC6|1|BQ|U|1645
5MC6|1|BQ|G|1646
5MC6|1|BQ|A|1647
5MC6|1|BQ|A|1648
5MC6|1|BQ|U|1649
*
5MC6|1|BQ|A|1806
5MC6|1|BQ|G|1807
5MC6|1|BQ|G|1808
5MC6|1|BQ|A|1809
5MC6|1|BQ|A|1810

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AN

60S ribosomal protein L27-A

Chain AW

60S ribosomal protein L2-A

Chain BN

60S ribosomal protein L34-A