IL_5MC6_196
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUUAGUAC*GGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MC6_196 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.1329
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5MC6|1|BQ|C|3018
5MC6|1|BQ|U|3019
5MC6|1|BQ|U|3020
5MC6|1|BQ|A|3021
5MC6|1|BQ|G|3022
5MC6|1|BQ|U|3023
5MC6|1|BQ|A|3024
5MC6|1|BQ|C|3025
*
5MC6|1|BQ|G|3030
5MC6|1|BQ|G|3031
5MC6|1|BQ|A|3032
5MC6|1|BQ|A|3033
5MC6|1|BQ|C|3034
5MC6|1|BQ|A|3035
5MC6|1|BQ|G|3036
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AB
- 60S ribosomal protein L23-A
- Chain AD
- 60S ribosomal protein L9-A
- Chain AO
- Ubiquitin-60S ribosomal protein L40
- Chain BA
- 60S ribosomal protein L3
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