IL_5MC6_212

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUA*UUAAGC

Length

9 nucleotides

Bulged bases

5MC6|1|BQ|G|3377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_212 not in the Motif Atlas

Homologous match to IL_8C3A_138

Geometric discrepancy: 0.1626

The information below is about IL_8C3A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

5MC6|1|BQ|G|3328
5MC6|1|BQ|U|3329
5MC6|1|BQ|A|3330
*
5MC6|1|BQ|U|3373
5MC6|1|BQ|U|3374
5MC6|1|BQ|A|3375
5MC6|1|BQ|A|3376
5MC6|1|BQ|G|3377
5MC6|1|BQ|C|3378

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain BA

60S ribosomal protein L3

Chain BC

60S ribosomal protein L31-A