3D structure

PDB id
5ME1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 30S Pre-Initiation Complex 2 (30S IC-2) Stalled by GE81112
Experimental method
ELECTRON MICROSCOPY
Resolution
13.5 Å

Loop

Sequence
UGUAG*CGUAGAGA
Length
13 nucleotides
Bulged bases
5ME1|1|A|A|702
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5ME1_034 not in the Motif Atlas
Homologous match to IL_5J7L_035
Geometric discrepancy: 0.0593
The information below is about IL_5J7L_035
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_01488.3
Basepair signature
cWW-tSS-tSH-L-R-tHS-L-cWW
Number of instances in this motif group
10

Unit IDs

5ME1|1|A|U|684
5ME1|1|A|G|685
5ME1|1|A|U|686
5ME1|1|A|A|687
5ME1|1|A|G|688
*
5ME1|1|A|C|699
5ME1|1|A|G|700
5ME1|1|A|U|701
5ME1|1|A|A|702
5ME1|1|A|G|703
5ME1|1|A|A|704
5ME1|1|A|G|705
5ME1|1|A|A|706

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain K
30S ribosomal protein S11
Chain Y
Translation initiation factor IF-3

Coloring options:


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