IL_5MEI_279
3D structure
- PDB id
- 5MEI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Agelastatin A bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GGUC*GGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MEI_279 not in the Motif Atlas
- Geometric match to IL_4V88_430
- Geometric discrepancy: 0.1073
- The information below is about IL_4V88_430
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
5MEI|1|A|G|871
5MEI|1|A|G|872
5MEI|1|A|U|873
5MEI|1|A|C|874
*
5MEI|1|A|G|953
5MEI|1|A|G|954
5MEI|1|A|A|955
5MEI|1|A|C|956
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain C
- 40S ribosomal protein S1-A
- Chain O
- 40S ribosomal protein S13
- Chain c
- 40S ribosomal protein S27-A
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