IL_5MEI_346
3D structure
- PDB id
- 5MEI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Agelastatin A bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GAAUGUAG*UAUUAUAGC
- Length
- 17 nucleotides
- Bulged bases
- 5MEI|1|AR|U|534, 5MEI|1|AR|U|558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MEI_346 not in the Motif Atlas
- Homologous match to IL_5TBW_020
- Geometric discrepancy: 0.0816
- The information below is about IL_5TBW_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07703.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5MEI|1|AR|G|531
5MEI|1|AR|A|532
5MEI|1|AR|A|533
5MEI|1|AR|U|534
5MEI|1|AR|G|535
5MEI|1|AR|U|536
5MEI|1|AR|A|537
5MEI|1|AR|G|538
*
5MEI|1|AR|U|553
5MEI|1|AR|A|554
5MEI|1|AR|U|555
5MEI|1|AR|U|556
5MEI|1|AR|A|557
5MEI|1|AR|U|558
5MEI|1|AR|A|559
5MEI|1|AR|G|560
5MEI|1|AR|C|561
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain CO
- 60S ribosomal protein L14-A
- Chain CU
- 60S ribosomal protein L20-A
- Chain p0
- 60S acidic ribosomal protein P0
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