IL_5MEI_491

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

5MEI|1|A|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MEI_491 not in the Motif Atlas

Homologous match to IL_8P9A_418

Geometric discrepancy: 0.1065

The information below is about IL_8P9A_418

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

5MEI|1|A|G|868
5MEI|1|A|A|869
5MEI|1|A|C|870
*
5MEI|1|A|G|957
5MEI|1|A|U|958
5MEI|1|A|U|959
5MEI|1|A|U|960

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain O

40S ribosomal protein S13

Chain c

40S ribosomal protein S27-A