IL_5MMI_038

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUCAGUG*CUAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_038 not in the Motif Atlas

Homologous match to IL_5J7L_280

Geometric discrepancy: 0.1055

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

5MMI|1|A|C|1046
5MMI|1|A|U|1047
5MMI|1|A|C|1048
5MMI|1|A|A|1049
5MMI|1|A|G|1050
5MMI|1|A|U|1051
5MMI|1|A|G|1052
*
5MMI|1|A|C|1167
5MMI|1|A|U|1168
5MMI|1|A|A|1169
5MMI|1|A|A|1170
5MMI|1|A|G|1171

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L36, chloroplastic

Chain G

plastid ribosomal protein uL6c

Chain K

50S ribosomal protein L13, chloroplastic