IL_5MMI_063

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAGG*CUGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_063 not in the Motif Atlas

Geometric match to IL_5J7L_063

Geometric discrepancy: 0.3195

The information below is about IL_5J7L_063

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_80231.1

Basepair signature

cWW-L-R-L-R-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

5MMI|1|A|C|1560
5MMI|1|A|C|1561
5MMI|1|A|A|1562
5MMI|1|A|G|1563
5MMI|1|A|G|1564
*
5MMI|1|A|C|1575
5MMI|1|A|U|1576
5MMI|1|A|G|1577
5MMI|1|A|A|1578
5MMI|1|A|A|1579
5MMI|1|A|G|1580

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

plastid ribosomal protein cL37, PSRP5