IL_5MMI_112
3D structure
- PDB id
- 5MMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the large subunit of the chloroplast ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUCC*GAACU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MMI_112 not in the Motif Atlas
- Geometric match to IL_1MJI_004
- Geometric discrepancy: 0.303
- The information below is about IL_1MJI_004
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.12
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 12
Unit IDs
5MMI|1|B|A|36
5MMI|1|B|U|37
5MMI|1|B|C|38
5MMI|1|B|C|39
*
5MMI|1|B|G|45
5MMI|1|B|A|46
5MMI|1|B|A|47
5MMI|1|B|C|48
5MMI|1|B|U|49
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L31
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- plastid ribosomal protein uL5c
- Chain P
- plastid ribosomal protein uL18c
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