IL_5NDK_021
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 5NDK|1|13|A|1161, 5NDK|1|13|U|1163
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDK_021 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1454
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5NDK|1|13|G|1144
5NDK|1|13|U|1145
5NDK|1|13|G|1146
5NDK|1|13|C|1147
5NDK|1|13|C|1148
5NDK|1|13|A|1149
5NDK|1|13|G|1150
*
5NDK|1|13|C|1157
5NDK|1|13|G|1158
5NDK|1|13|G|1159
5NDK|1|13|U|1160
5NDK|1|13|A|1161
5NDK|1|13|A|1162
5NDK|1|13|U|1163
5NDK|1|13|A|1164
5NDK|1|13|C|1165
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 2E
- 30S ribosomal protein S3
- Chain 3E
- 30S ribosomal protein S4
- Chain 3I
- 30S ribosomal protein S12
- Chain W1
- Transfer RNA; tRNA
- Chain Y1
- mRNA
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