IL_5NDK_030
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GGAAUU*AGGAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDK_030 not in the Motif Atlas
- Homologous match to IL_5J7L_034
- Geometric discrepancy: 0.0721
- The information below is about IL_5J7L_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04668.2
- Basepair signature
- cWW-cWW-cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 8
Unit IDs
5NDK|1|13|G|1302
5NDK|1|13|G|1303
5NDK|1|13|A|1304
5NDK|1|13|A|1305
5NDK|1|13|U|1306
5NDK|1|13|U|1307
*
5NDK|1|13|A|1341
5NDK|1|13|G|1342
5NDK|1|13|G|1343
5NDK|1|13|A|1344
5NDK|1|13|A|1345
5NDK|1|13|C|1346
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L2
- Chain 2I
- 30S ribosomal protein S11
- Chain 5E
- 30S ribosomal protein S6
- Chain 9I
- 30S ribosomal protein S18
Coloring options: