IL_5NGM_106
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAUGGUAG*CUAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NGM_106 not in the Motif Atlas
- Homologous match to IL_7A0S_106
- Geometric discrepancy: 0.1454
- The information below is about IL_7A0S_106
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_71138.1
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
5NGM|1|AB|C|69
5NGM|1|AB|G|70
5NGM|1|AB|A|71
5NGM|1|AB|U|72
5NGM|1|AB|G|73
5NGM|1|AB|G|74
5NGM|1|AB|U|75
5NGM|1|AB|A|76
5NGM|1|AB|G|77
*
5NGM|1|AB|C|94
5NGM|1|AB|U|95
5NGM|1|AB|A|96
5NGM|1|AB|G|97
5NGM|1|AB|A|98
5NGM|1|AB|G|99
5NGM|1|AB|U|100
5NGM|1|AB|A|101
5NGM|1|AB|G|102
Current chains
- Chain AB
- 5S Ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AK
- 50S ribosomal protein L16
- Chain AT
- 50S ribosomal protein L25
- Chain AU
- 50S ribosomal protein L27
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