IL_5NGM_118

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUUAG*CAACGAUG

Length

14 nucleotides

Bulged bases

5NGM|1|Aa|U|252, 5NGM|1|Aa|C|288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_118 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.1753

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

5NGM|1|Aa|C|250
5NGM|1|Aa|A|251
5NGM|1|Aa|U|252
5NGM|1|Aa|U|253
5NGM|1|Aa|A|254
5NGM|1|Aa|G|255
*
5NGM|1|Aa|C|285
5NGM|1|Aa|A|286
5NGM|1|Aa|A|287
5NGM|1|Aa|C|288
5NGM|1|Aa|G|289
5NGM|1|Aa|A|290
5NGM|1|Aa|U|291
5NGM|1|Aa|G|292

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Al

30S ribosomal protein S12

Chain Aq

30S ribosomal protein S17