IL_5NGM_127
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 5NGM|1|Aa|A|540, 5NGM|1|Aa|U|542
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NGM_127 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.2231
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5NGM|1|Aa|G|523
5NGM|1|Aa|U|524
5NGM|1|Aa|G|525
5NGM|1|Aa|C|526
5NGM|1|Aa|C|527
5NGM|1|Aa|A|528
5NGM|1|Aa|G|529
*
5NGM|1|Aa|C|536
5NGM|1|Aa|G|537
5NGM|1|Aa|G|538
5NGM|1|Aa|U|539
5NGM|1|Aa|A|540
5NGM|1|Aa|A|541
5NGM|1|Aa|U|542
5NGM|1|Aa|A|543
5NGM|1|Aa|C|544
Current chains
- Chain Aa
- 16S ribosomal RNA
Nearby chains
- Chain Ac
- 30S ribosomal protein S3
- Chain Ad
- 30S ribosomal protein S4
- Chain Al
- 30S ribosomal protein S12
- Chain Av
- Ribosome hibernation promoting factor
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