IL_5NGM_141
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAGUACG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NGM_141 not in the Motif Atlas
- Homologous match to IL_4LFB_034
- Geometric discrepancy: 0.1289
- The information below is about IL_4LFB_034
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.4
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
5NGM|1|Aa|G|896
5NGM|1|Aa|G|897
5NGM|1|Aa|A|898
5NGM|1|Aa|G|899
5NGM|1|Aa|U|900
5NGM|1|Aa|A|901
5NGM|1|Aa|C|902
5NGM|1|Aa|G|903
*
5NGM|1|Aa|U|914
5NGM|1|Aa|G|915
5NGM|1|Aa|A|916
5NGM|1|Aa|A|917
5NGM|1|Aa|A|918
5NGM|1|Aa|C|919
Current chains
- Chain Aa
- 16S ribosomal RNA
Nearby chains
- Chain Al
- 30S ribosomal protein S12
Coloring options: