IL_5NGM_164

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCGAAG*CGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_164 not in the Motif Atlas

Geometric match to IL_5J7L_063

Geometric discrepancy: 0.2092

The information below is about IL_5J7L_063

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_80231.1

Basepair signature

cWW-L-R-L-R-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

5NGM|1|Aa|C|1440
5NGM|1|Aa|C|1441
5NGM|1|Aa|G|1442
5NGM|1|Aa|A|1443
5NGM|1|Aa|A|1444
5NGM|1|Aa|G|1445
*
5NGM|1|Aa|C|1477
5NGM|1|Aa|G|1478
5NGM|1|Aa|A|1479
5NGM|1|Aa|A|1480
5NGM|1|Aa|G|1481

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AI

50S ribosomal protein L14

Chain AN

50S ribosomal protein L19