IL_5NJT_027
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGAAAGCC*GAGGG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NJT_027 not in the Motif Atlas
- Homologous match to IL_5J7L_030
- Geometric discrepancy: 0.2617
- The information below is about IL_5J7L_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_78349.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
5NJT|1|A|U|614
5NJT|1|A|G|615
5NJT|1|A|A|616
5NJT|1|A|A|617
5NJT|1|A|A|618
5NJT|1|A|G|619
5NJT|1|A|C|620
5NJT|1|A|C|621
*
5NJT|1|A|G|637
5NJT|1|A|A|638
5NJT|1|A|G|639
5NJT|1|A|G|640
5NJT|1|A|G|641
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain D
- 30S ribosomal protein S4
- Chain P
- 30S ribosomal protein S16
Coloring options: