IL_5NJT_052

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCAG*CCAAUC

Length

10 nucleotides

Bulged bases

5NJT|1|A|A|1266, 5NJT|1|A|A|1289

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_052 not in the Motif Atlas

Homologous match to IL_6CZR_161

Geometric discrepancy: 0.1739

The information below is about IL_6CZR_161

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.1

Basepair signature

cWW-cSS-L-R-cWW

Number of instances in this motif group

3

Unit IDs

5NJT|1|A|G|1264
5NJT|1|A|C|1265
5NJT|1|A|A|1266
5NJT|1|A|G|1267
*
5NJT|1|A|C|1286
5NJT|1|A|C|1287
5NJT|1|A|A|1288
5NJT|1|A|A|1289
5NJT|1|A|U|1290
5NJT|1|A|C|1291

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain C

30S ribosomal protein S3

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14