IL_5NJT_066
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NJT_066 not in the Motif Atlas
- Geometric match to IL_7A0S_001
- Geometric discrepancy: 0.2527
- The information below is about IL_7A0S_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_22311.1
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
5NJT|1|U|G|24
5NJT|1|U|U|25
5NJT|1|U|G|26
5NJT|1|U|G|27
5NJT|1|U|A|28
5NJT|1|U|U|29
5NJT|1|U|G|30
*
5NJT|1|U|C|556
5NJT|1|U|U|557
5NJT|1|U|G|558
5NJT|1|U|A|559
5NJT|1|U|A|560
5NJT|1|U|A|561
5NJT|1|U|C|562
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain j
- 50S ribosomal protein L20
- Chain l
- 50S ribosomal protein L22
- Chain p
- 50S ribosomal protein L32
Coloring options: