IL_5NJT_101

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_101 not in the Motif Atlas

Homologous match to IL_7A0S_034

Geometric discrepancy: 0.1399

The information below is about IL_7A0S_034

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

5NJT|1|U|U|1050
5NJT|1|U|C|1051
5NJT|1|U|C|1052
5NJT|1|U|C|1053
5NJT|1|U|A|1054
5NJT|1|U|A|1055
5NJT|1|U|A|1056
5NJT|1|U|G|1057
*
5NJT|1|U|C|1196
5NJT|1|U|A|1197

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L13

Chain j

50S ribosomal protein L20