IL_5NJT_111

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5NJT|1|U|U|1251

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_111 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1289

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.1

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

23

Unit IDs

5NJT|1|U|C|1248
5NJT|1|U|U|1249
5NJT|1|U|G|1250
5NJT|1|U|U|1251
5NJT|1|U|G|1252
5NJT|1|U|A|1253
5NJT|1|U|A|1254
5NJT|1|U|G|1255
*
5NJT|1|U|U|1274
5NJT|1|U|G|1275
5NJT|1|U|G|1276
5NJT|1|U|A|1277
5NJT|1|U|G|1278

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain j

50S ribosomal protein L20