IL_5NP6_067
3D structure
- PDB id
- 5NP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S structure prior to bypassing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NP6_067 not in the Motif Atlas
- Geometric match to IL_7A0S_001
- Geometric discrepancy: 0.1469
- The information below is about IL_7A0S_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_22311.1
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
5NP6|1|Y|G|24
5NP6|1|Y|U|25
5NP6|1|Y|G|26
5NP6|1|Y|G|27
5NP6|1|Y|A|28
5NP6|1|Y|U|29
5NP6|1|Y|G|30
*
5NP6|1|Y|C|510
5NP6|1|Y|U|511
5NP6|1|Y|G|512
5NP6|1|Y|A|513
5NP6|1|Y|A|514
5NP6|1|Y|A|515
5NP6|1|Y|C|516
Current chains
- Chain Y
- 23S ribosomal RNA
Nearby chains
- Chain o
- 50S ribosomal protein L20
- Chain q
- 50S ribosomal protein L22
- Chain y
- 50S ribosomal protein L32
Coloring options: