IL_5NP6_140
3D structure
- PDB id
- 5NP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S structure prior to bypassing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGAAA(5MU)UCCUUG*C(5MC)UG
- Length
- 16 nucleotides
- Bulged bases
- 5NP6|1|Y|A|1938, 5NP6|1|Y|C|1942, 5NP6|1|Y|U|1944, 5NP6|1|Y|U|1963
- QA status
- Modified nucleotides: 5MU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NP6_140 not in the Motif Atlas
- Geometric match to IL_4WF9_077
- Geometric discrepancy: 0.3528
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.1
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-tSW-L
- Number of instances in this motif group
- 8
Unit IDs
5NP6|1|Y|C|1934
5NP6|1|Y|G|1935
5NP6|1|Y|A|1936
5NP6|1|Y|A|1937
5NP6|1|Y|A|1938
5NP6|1|Y|5MU|1939
5NP6|1|Y|U|1940
5NP6|1|Y|C|1941
5NP6|1|Y|C|1942
5NP6|1|Y|U|1943
5NP6|1|Y|U|1944
5NP6|1|Y|G|1945
*
5NP6|1|Y|C|1961
5NP6|1|Y|5MC|1962
5NP6|1|Y|U|1963
5NP6|1|Y|G|1964
Current chains
- Chain Y
- 23S ribosomal RNA
Nearby chains
- Chain D
- Small subunit ribosomal RNA; SSU rRNA
- Chain a
- 50S ribosomal protein L2
Coloring options: