IL_5NP6_195

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGCCU*AUGUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NP6_195 not in the Motif Atlas

Geometric match to IL_5BTM_001

Geometric discrepancy: 0.297

The information below is about IL_5BTM_001

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

5NP6|1|Y|A|2101
5NP6|1|Y|G|2102
5NP6|1|Y|C|2103
5NP6|1|Y|C|2104
5NP6|1|Y|U|2105
*
5NP6|1|Y|A|2184
5NP6|1|Y|U|2185
5NP6|1|Y|G|2186
5NP6|1|Y|U|2187
5NP6|1|Y|U|2188

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L9