IL_5NRG_060

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GAGGAG*CGAAUC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NRG_060 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.3266

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_29495.1

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5NRG|1|X|G|1882
5NRG|1|X|A|1883
5NRG|1|X|G|1884
5NRG|1|X|G|1885
5NRG|1|X|A|1886
5NRG|1|X|G|1887
*
5NRG|1|X|C|1909
5NRG|1|X|G|1910
5NRG|1|X|A|1911
5NRG|1|X|A|1912
5NRG|1|X|U|1913
5NRG|1|X|C|1914

Current chains

Chain X

23S ribosomal RNA

Nearby chains